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MATN2 matrilin 2 [ Panthera tigris (tiger) ]

Gene ID: 102961143, updated on 10-Mar-2024

Summary

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Gene symbol
MATN2
Gene description
matrilin 2
See related
Ensembl:ENSPTIG00000015210
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: F2
Exon count:
19
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) F2 NC_056676.1 (43778585..43913862)

Chromosome F2 - NC_056676.1Genomic Context describing neighboring genes Neighboring gene metadherin Neighboring gene lysosomal protein transmembrane 4 beta Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1-like Neighboring gene small nucleolar RNA SNORA72 Neighboring gene ribosomal protein L30 Neighboring gene glutamate rich 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056676.1 Chromosome F2 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrilin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056676.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    43778585..43913862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042973260.1 → XP_042829194.1  matrilin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C9K0V3
    Conserved Domains (4) summary
    cd01475
    Location:55 → 277
    vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
    pfam10393
    Location:893 → 935
    Matrilin_ccoil; Trimeric coiled-coil oligomerization domain of matrilin
    pfam14670
    Location:325 → 360
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:653 → 874
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_042973259.1 → XP_042829193.1  matrilin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C9K0V3
    Conserved Domains (4) summary
    cd01475
    Location:55 → 277
    vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
    pfam10393
    Location:912 → 954
    Matrilin_ccoil; Trimeric coiled-coil oligomerization domain of matrilin
    pfam14670
    Location:325 → 360
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:653 → 893
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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