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CLTA clathrin light chain A [ Panthera tigris (tiger) ]

Gene ID: 102956147, updated on 10-Mar-2024

Summary

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Gene symbol
CLTA
Gene description
clathrin light chain A
See related
Ensembl:ENSPTIG00000010744
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: D4
Exon count:
5
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) D4 NC_056672.1 (57431676..57453597)

Chromosome D4 - NC_056672.1Genomic Context describing neighboring genes Neighboring gene GLI pathogenesis related 2 Neighboring gene proline-rich proteoglycan 2-like Neighboring gene calicin Neighboring gene glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase Neighboring gene ring finger protein 38

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056672.1 Chromosome D4 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic endocytic zone cytoplasmic component IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clathrin light chain A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056672.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    57431676..57453597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042963534.1 → XP_042819468.1  clathrin light chain A isoform X2

    Conserved Domains (1) summary
    pfam01086
    Location:20 → 161
    Clathrin_lg_ch; Clathrin light chain

  2. XM_015535000.2 → XP_015390486.2  clathrin light chain A isoform X1

    Conserved Domains (1) summary
    pfam01086
    Location:20 → 213
    Clathrin_lg_ch; Clathrin light chain
Nucleotide Protein
Heading Accession and Version

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