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IGSF11 immunoglobulin superfamily member 11 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102946786, updated on 10-Mar-2024

Summary

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Gene symbol
IGSF11
Gene description
immunoglobulin superfamily member 11
Locus tag
UY3_09198
See related
EnsemblRapid:ENSCMYG00015016331
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (199785129..199939773, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (199785176..199934271, complement)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene zona pellucida sperm-binding protein 4 Neighboring gene uncharacterized LOC122464175 Neighboring gene testis expressed 55 Neighboring gene uroplakin 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ionotropic glutamate receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
immunoglobulin superfamily member 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    199785129..199939773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043538692.1 → XP_043394627.1  immunoglobulin superfamily member 11 isoform X2

    Conserved Domains (3) summary
    smart00406
    Location:28 → 111
    IGv; Immunoglobulin V-Type
    cd00096
    Location:150 → 154
    Ig; Ig strand B [structural motif]
    cl11960
    Location:144 → 212
    Ig; Immunoglobulin domain

  2. XM_037909201.2 → XP_037765129.1  immunoglobulin superfamily member 11 isoform X1

    Related
    ENSCMYP00015024998.1, ENSCMYT00015030719.1
    Conserved Domains (3) summary
    pfam13927
    Location:170 → 235
    Ig_3; Immunoglobulin domain
    cd00096
    Location:39 → 43
    Ig; Ig strand A [structural motif]
    cl11960
    Location:39 → 156
    Ig; Immunoglobulin domain
Nucleotide Protein
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