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UBN1 ubinuclein 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102945934, updated on 10-Mar-2024

Summary

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Gene symbol
UBN1
Gene description
ubinuclein 1
Locus tag
UY3_03248
See related
EnsemblRapid:ENSCMYG00015016810
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 10 NC_051250.2 (29819584..29854098, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 10 NC_051250.1 (54200200..54234667)

Chromosome 10 - NC_051250.2Genomic Context describing neighboring genes Neighboring gene syntaxin-binding protein 4 Neighboring gene uncharacterized LOC119567208 Neighboring gene uncharacterized LOC119567159 Neighboring gene periplakin Neighboring gene glyoxylate reductase 1 homolog Neighboring gene rogdi atypical leucine zipper Neighboring gene small integral membrane protein 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubinuclein-1
Names
Ubinuclein-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051250.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    29819584..29854098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043523472.1 → XP_043379407.1  ubinuclein-1 isoform X4

    UniProtKB/TrEMBL
    M7BUP3

  2. XM_043523473.1 → XP_043379408.1  ubinuclein-1 isoform X6

    UniProtKB/TrEMBL
    M7BUP3

  3. XM_037910158.2 → XP_037766086.1  ubinuclein-1 isoform X2

    UniProtKB/TrEMBL
    M7BUP3
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  4. XM_027818194.3 → XP_027673995.2  ubinuclein-1 isoform X7

    UniProtKB/TrEMBL
    M7BUP3
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  5. XM_007055838.4 → XP_007055900.2  ubinuclein-1 isoform X3

    UniProtKB/TrEMBL
    M7BUP3
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  6. XM_037910160.2 → XP_037766088.1  ubinuclein-1 isoform X5

    UniProtKB/TrEMBL
    M7BUP3
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  7. XM_037910155.2 → XP_037766083.1  ubinuclein-1 isoform X1

    UniProtKB/TrEMBL
    M7BUP3
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  8. XM_043523474.1 → XP_043379409.1  ubinuclein-1 isoform X7

    UniProtKB/TrEMBL
    M7BUP3
    Related
    ENSCMYP00015025748.1, ENSCMYT00015031582.1
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  9. XM_043523470.1 → XP_043379405.1  ubinuclein-1 isoform X3

    UniProtKB/TrEMBL
    M7BUP3
    Related
    ENSCMYP00015025744.1, ENSCMYT00015031577.1
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  10. XM_037910156.2 → XP_037766084.1  ubinuclein-1 isoform X1

    UniProtKB/TrEMBL
    M7BUP3
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  11. XM_043523471.1 → XP_043379406.1  ubinuclein-1 isoform X3

    UniProtKB/TrEMBL
    M7BUP3
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  12. XM_043523475.1 → XP_043379410.1  ubinuclein-1 isoform X7

    UniProtKB/TrEMBL
    M7BUP3
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain

  13. XM_037910157.2 → XP_037766085.1  ubinuclein-1 isoform X1

    UniProtKB/TrEMBL
    M7BUP3
    Conserved Domains (2) summary
    pfam08729
    Location:115 → 166
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:351 → 570
    UBN_AB; Ubinuclein conserved middle domain
Nucleotide Protein
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