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RNF213 ring finger protein 213 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102944500, updated on 10-Mar-2024

Summary

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Gene symbol
RNF213
Gene description
ring finger protein 213
See related
EnsemblRapid:ENSCMYG00015017297
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See RNF213 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
70
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 14 NC_051254.2 (2102866..2196122)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 12 NC_051252.1 (2102886..2196113)

Chromosome 14 - NC_051254.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 member 11 Neighboring gene N-sulfoglucosamine sulfohydrolase Neighboring gene endonuclease V Neighboring gene neuronal pentraxin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sprouting angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF213

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051254.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    2102866..2196122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043527638.1 → XP_043383573.1  E3 ubiquitin-protein ligase RNF213 isoform X8

    Conserved Domains (3) summary
    smart00382
    Location:2484 → 2597
    AAA; ATPases associated with a variety of cellular activities
    COG0714
    Location:2823 → 2938
    MoxR; MoxR-like ATPase [General function prediction only]
    cl17238
    Location:4039 → 4078
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_037914625.2 → XP_037770553.1  E3 ubiquitin-protein ligase RNF213 isoform X5

    Conserved Domains (3) summary
    smart00382
    Location:2470 → 2583
    AAA; ATPases associated with a variety of cellular activities
    cd00162
    Location:4025 → 4063
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl17238
    Location:4025 → 4064
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. XM_043527631.1 → XP_043383566.1  E3 ubiquitin-protein ligase RNF213 isoform X1

    Related
    ENSCMYP00015026456.1, ENSCMYT00015032519.1
    Conserved Domains (3) summary
    smart00382
    Location:2484 → 2597
    AAA; ATPases associated with a variety of cellular activities
    COG0714
    Location:2823 → 2938
    MoxR; MoxR-like ATPase [General function prediction only]
    cl17238
    Location:4039 → 4078
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  4. XM_043527634.1 → XP_043383569.1  E3 ubiquitin-protein ligase RNF213 isoform X3

    Conserved Domains (3) summary
    smart00382
    Location:2483 → 2596
    AAA; ATPases associated with a variety of cellular activities
    COG0714
    Location:2822 → 2937
    MoxR; MoxR-like ATPase [General function prediction only]
    cl17238
    Location:4038 → 4077
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  5. XM_043527635.1 → XP_043383570.1  E3 ubiquitin-protein ligase RNF213 isoform X4

    Conserved Domains (3) summary
    smart00382
    Location:2483 → 2596
    AAA; ATPases associated with a variety of cellular activities
    COG0714
    Location:2822 → 2937
    MoxR; MoxR-like ATPase [General function prediction only]
    cl17238
    Location:4038 → 4077
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  6. XM_043527633.1 → XP_043383568.1  E3 ubiquitin-protein ligase RNF213 isoform X2

    Conserved Domains (3) summary
    smart00382
    Location:2483 → 2596
    AAA; ATPases associated with a variety of cellular activities
    COG0714
    Location:2822 → 2937
    MoxR; MoxR-like ATPase [General function prediction only]
    cl17238
    Location:4038 → 4077
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  7. XM_043527636.1 → XP_043383571.1  E3 ubiquitin-protein ligase RNF213 isoform X6

    Related
    ENSCMYP00015026473.1, ENSCMYT00015032534.1
    Conserved Domains (3) summary
    smart00382
    Location:2441 → 2554
    AAA; ATPases associated with a variety of cellular activities
    COG0714
    Location:2780 → 2895
    MoxR; MoxR-like ATPase [General function prediction only]
    cl17238
    Location:3996 → 4035
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  8. XM_043527637.1 → XP_043383572.1  E3 ubiquitin-protein ligase RNF213 isoform X7

    Conserved Domains (3) summary
    smart00382
    Location:2440 → 2553
    AAA; ATPases associated with a variety of cellular activities
    COG0714
    Location:2779 → 2894
    MoxR; MoxR-like ATPase [General function prediction only]
    cl17238
    Location:3995 → 4034
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  9. XM_043527632.1 → XP_043383567.1  E3 ubiquitin-protein ligase RNF213 isoform X1

    Conserved Domains (3) summary
    smart00382
    Location:2484 → 2597
    AAA; ATPases associated with a variety of cellular activities
    COG0714
    Location:2823 → 2938
    MoxR; MoxR-like ATPase [General function prediction only]
    cl17238
    Location:4039 → 4078
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

RNA

  1. XR_006285635.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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