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VPS13C vacuolar protein sorting 13 homolog C [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102941652, updated on 10-Mar-2024

Summary

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Gene symbol
VPS13C
Gene description
vacuolar protein sorting 13 homolog C
Locus tag
UY3_12577
See related
EnsemblRapid:ENSCMYG00015018706
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
86
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 10 NC_051250.2 (51772402..51964569)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 10 NC_051250.1 (32089682..32281833, complement)

Chromosome 10 - NC_051250.2Genomic Context describing neighboring genes Neighboring gene C2 calcium-dependent domain-containing protein 4C Neighboring gene C2 calcium-dependent domain-containing protein 4C Neighboring gene uncharacterized LOC122462147 Neighboring gene uncharacterized LOC122462188 Neighboring gene RAR related orphan receptor A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein retention in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 13C
Names
Vacuolar protein sorting-associated protein 13C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051250.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    51772402..51964569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027828023.3 → XP_027683824.2  vacuolar protein sorting-associated protein 13C isoform X3

    UniProtKB/TrEMBL
    M7AXS7
    Related
    ENSCMYP00015028957.1, ENSCMYT00015035332.1
    Conserved Domains (4) summary
    COG5043
    Location:3 → 1336
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2729 → 2983
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam16908
    Location:142 → 370
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:3292 → 3468
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  2. XM_037910913.2 → XP_037766841.1  vacuolar protein sorting-associated protein 13C isoform X4

    UniProtKB/TrEMBL
    M7AXS7
    Conserved Domains (4) summary
    COG5043
    Location:3 → 1335
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2728 → 2982
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam16908
    Location:142 → 370
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:3291 → 3467
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  3. XM_043524468.1 → XP_043380403.1  vacuolar protein sorting-associated protein 13C isoform X5

    UniProtKB/TrEMBL
    M7AXS7
    Conserved Domains (1) summary
    COG5043
    Location:3 → 1379
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]

  4. XM_043524467.1 → XP_043380402.1  vacuolar protein sorting-associated protein 13C isoform X1

    UniProtKB/TrEMBL
    M7AXS7
    Related
    ENSCMYP00015028924.1, ENSCMYT00015035279.1
    Conserved Domains (1) summary
    COG5043
    Location:3 → 1379
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]

  5. XM_037910916.2 → XP_037766844.1  vacuolar protein sorting-associated protein 13C isoform X2

    UniProtKB/TrEMBL
    M7AXS7
    Conserved Domains (4) summary
    COG5043
    Location:3 → 1378
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2771 → 3025
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam16908
    Location:185 → 413
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:3334 → 3510
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
Nucleotide Protein
Heading Accession and Version

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