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BNC1 basonuclin zinc finger protein 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102940623, updated on 10-Mar-2024

Summary

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Gene symbol
BNC1
Gene description
basonuclin zinc finger protein 1
Locus tag
UY3_13742
See related
EnsemblRapid:ENSCMYG00015010861
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 10 NC_051250.2 (65978456..66079042, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 10 NC_051250.1 (17975092..18075785)

Chromosome 10 - NC_051250.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122461935 Neighboring gene transmembrane 6 superfamily member 1 Neighboring gene HDGF like 3 Neighboring gene uncharacterized LOC122461915 Neighboring gene SH3 domain containing GRB2 like 3, endophilin A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein basonuclin-1
Names
Zinc finger protein basonuclin-1
basonuclin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051250.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    65978456..66079042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007066830.4 → XP_007066892.1  zinc finger protein basonuclin-1 isoform X2

    UniProtKB/TrEMBL
    M7BLT2
    Related
    ENSCMYP00015016883.1, ENSCMYT00015020428.1
    Conserved Domains (1) summary
    sd00017
    Location:331 → 352
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_037911232.2 → XP_037767160.1  zinc finger protein basonuclin-1 isoform X1

    UniProtKB/TrEMBL
    M7BLT2
    Conserved Domains (2) summary
    sd00017
    Location:331 → 352
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:922 → 943
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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