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LRRC4 leucine rich repeat containing 4 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102938423, updated on 10-Mar-2024

Summary

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Gene symbol
LRRC4
Gene description
leucine rich repeat containing 4
Locus tag
UY3_12324
See related
EnsemblRapid:ENSCMYG00015024379
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (345985789..345991100, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (345985827..345989260, complement)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122462513 Neighboring gene staphylococcal nuclease and tudor domain containing 1 Neighboring gene uncharacterized LOC122461592 Neighboring gene uncharacterized LOC122462382 Neighboring gene leptin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in excitatory synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic density protein 95 clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic membrane adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 4
Names
Leucine-rich repeat-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    345985789..345991100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007065448.4 → XP_007065510.2  leucine-rich repeat-containing protein 4

    UniProtKB/TrEMBL
    M7BEI5
    Related
    ENSCMYP00015037247.1, ENSCMYT00015045839.1
    Conserved Domains (5) summary
    TIGR00864
    Location:268 → 367
    PCC; polycystin cation channel protein
    smart00013
    Location:42 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00409
    Location:355 → 437
    IG; Immunoglobulin
    COG4886
    Location:70 → 287
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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