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CASS4 Cas scaffold protein family member 4 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102932587, updated on 11-Apr-2024

Summary

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Gene symbol
CASS4
Gene description
Cas scaffold protein family member 4
See related
EnsemblRapid:ENSCMYG00015006337
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 13 NC_051253.2 (12930117..12960920, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 13 NC_051253.1 (29992500..30023326)

Chromosome 13 - NC_051253.2Genomic Context describing neighboring genes Neighboring gene transcription factor AP-2 gamma Neighboring gene beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 Neighboring gene replication termination factor 2 Neighboring gene cleavage stimulation factor subunit 1 Neighboring gene aurora kinase A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cas scaffolding protein family member 4
Names
Cas scaffolding protein family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051253.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    12930117..12960920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043526572.1 → XP_043382507.1  cas scaffolding protein family member 4 isoform X3

    Conserved Domains (3) summary
    cd11551
    Location:391 → 549
    Serine_rich_CASS4; Serine rich Four helix bundle domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4; a protein interaction module
    cd12000
    Location:17 → 72
    SH3_CASS4; Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4
    cl13463
    Location:655 → 775
    FAT-like_CAS_C; C-terminal FAT-like Four helix bundle domain, also called DUF3513, of CAS (Crk-Associated Substrate) scaffolding proteins; a protein interaction module

  2. XM_037915792.2 → XP_037771720.1  cas scaffolding protein family member 4 isoform X1

    Related
    ENSCMYP00015009760.1, ENSCMYT00015011871.1
    Conserved Domains (3) summary
    cd11551
    Location:476 → 634
    Serine_rich_CASS4; Serine rich Four helix bundle domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4; a protein interaction module
    cd12000
    Location:17 → 72
    SH3_CASS4; Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4
    cl13463
    Location:740 → 860
    FAT-like_CAS_C; C-terminal FAT-like Four helix bundle domain, also called DUF3513, of CAS (Crk-Associated Substrate) scaffolding proteins; a protein interaction module

  3. XM_043526573.1 → XP_043382508.1  cas scaffolding protein family member 4 isoform X4

    Conserved Domains (3) summary
    cd11551
    Location:381 → 539
    Serine_rich_CASS4; Serine rich Four helix bundle domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4; a protein interaction module
    cd12000
    Location:7 → 62
    SH3_CASS4; Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4
    cl13463
    Location:645 → 765
    FAT-like_CAS_C; C-terminal FAT-like Four helix bundle domain, also called DUF3513, of CAS (Crk-Associated Substrate) scaffolding proteins; a protein interaction module

  4. XM_027822194.3 → XP_027677995.2  cas scaffolding protein family member 4 isoform X2

    Related
    ENSCMYP00015009756.1, ENSCMYT00015011867.1
    Conserved Domains (3) summary
    cd11551
    Location:466 → 624
    Serine_rich_CASS4; Serine rich Four helix bundle domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4; a protein interaction module
    cd12000
    Location:7 → 62
    SH3_CASS4; Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4
    cl13463
    Location:730 → 850
    FAT-like_CAS_C; C-terminal FAT-like Four helix bundle domain, also called DUF3513, of CAS (Crk-Associated Substrate) scaffolding proteins; a protein interaction module

  5. XM_043526575.1 → XP_043382510.1  cas scaffolding protein family member 4 isoform X5

    Conserved Domains (2) summary
    cd11551
    Location:359 → 517
    Serine_rich_CASS4; Serine rich Four helix bundle domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4; a protein interaction module
    cl13463
    Location:623 → 743
    FAT-like_CAS_C; C-terminal FAT-like Four helix bundle domain, also called DUF3513, of CAS (Crk-Associated Substrate) scaffolding proteins; a protein interaction module

  6. XM_043526574.1 → XP_043382509.1  cas scaffolding protein family member 4 isoform X5

    Conserved Domains (2) summary
    cd11551
    Location:359 → 517
    Serine_rich_CASS4; Serine rich Four helix bundle domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4; a protein interaction module
    cl13463
    Location:623 → 743
    FAT-like_CAS_C; C-terminal FAT-like Four helix bundle domain, also called DUF3513, of CAS (Crk-Associated Substrate) scaffolding proteins; a protein interaction module
Nucleotide Protein
Heading Accession and Version

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