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PCDH1 protocadherin 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102931980, updated on 10-Mar-2024

Summary

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Gene symbol
PCDH1
Gene description
protocadherin 1
Locus tag
UY3_07524
See related
EnsemblRapid:ENSCMYG00015020115
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See PCDH1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 8 NC_057854.1 (38757926..38892613)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 8 NC_051248.1 (38758652..38892613)

Chromosome 8 - NC_057854.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122461468 Neighboring gene uncharacterized LOC122461446 Neighboring gene uncharacterized LOC122461397 Neighboring gene DAP3 binding cell death enhancer 1 Neighboring gene protocadherin 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-1
Names
Protocadherin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057854.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    38757926..38892613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043520929.1 → XP_043376864.1  protocadherin-1 isoform X1

    UniProtKB/TrEMBL
    M7C4G3
    Related
    ENSCMYP00015030710.1, ENSCMYT00015037816.1
    Conserved Domains (2) summary
    cd11304
    Location:477 → 573
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:780 → 993
    Protocadherin

  2. XM_037907242.2 → XP_037763170.1  protocadherin-1 isoform X2

    UniProtKB/TrEMBL
    M7C4G3
    Related
    ENSCMYP00015030704.1, ENSCMYT00015037809.1
    Conserved Domains (2) summary
    cd11304
    Location:498 → 594
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:801 → 1014
    Protocadherin

  3. XM_043520928.1 → XP_043376863.1  protocadherin-1 isoform X1

    UniProtKB/TrEMBL
    M7C4G3
    Conserved Domains (2) summary
    cd11304
    Location:477 → 573
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:780 → 993
    Protocadherin
Nucleotide Protein
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