U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CPSF6 cleavage and polyadenylation specific factor 6 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102930952, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CPSF6
Gene description
cleavage and polyadenylation specific factor 6
Locus tag
UY3_12680
See related
EnsemblRapid:ENSCMYG00015023721
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (283503109..283595148, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (283526272..283595141, complement)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119564519 Neighboring gene YEATS domain containing 4 Neighboring gene lysozyme Neighboring gene 60S ribosomal protein L31-like Neighboring gene carboxypeptidase M Neighboring gene uncharacterized LOC122466123

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA alternative polyadenylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cleavage and polyadenylation specificity factor subunit 6
Names
Cleavage and polyadenylation specificity factor subunit 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    283503109..283595148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037886836.2 → XP_037742764.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

    UniProtKB/TrEMBL
    M7AXH0
    Related
    ENSCMYP00015036125.1, ENSCMYT00015044552.1
    Conserved Domains (2) summary
    COG0724
    Location:9 → 152
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12643
    Location:82 → 158
    RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

  2. XM_037886827.2 → XP_037742755.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

    UniProtKB/TrEMBL
    M7AXH0
    Conserved Domains (2) summary
    COG0724
    Location:9 → 152
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12643
    Location:82 → 158
    RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

  3. XM_037886817.2 → XP_037742745.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

    UniProtKB/TrEMBL
    M7AXH0
    Related
    ENSCMYP00015036122.1, ENSCMYT00015044549.1
    Conserved Domains (2) summary
    COG0724
    Location:9 → 152
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12643
    Location:82 → 158
    RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

  4. XM_037886808.2 → XP_037742736.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

    UniProtKB/TrEMBL
    M7AXH0
    Conserved Domains (2) summary
    COG0724
    Location:9 → 152
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12643
    Location:82 → 158
    RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

  5. XM_037886788.2 → XP_037742716.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

    UniProtKB/TrEMBL
    M7AXH0
    Conserved Domains (2) summary
    COG0724
    Location:9 → 152
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12643
    Location:82 → 158
    RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

  6. XM_037886843.2 → XP_037742771.1  cleavage and polyadenylation specificity factor subunit 6 isoform X5

    Conserved Domains (1) summary
    cl17169
    Location:1 → 18
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_043547989.1 → XP_043403924.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

    UniProtKB/TrEMBL
    M7AXH0
    Conserved Domains (2) summary
    COG0724
    Location:9 → 152
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12643
    Location:82 → 158
    RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

RNA

  1. XR_006291388.1 RNA Sequence

  2. XR_006291389.1 RNA Sequence

  3. XR_006291387.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.