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Bard1 BRCA1 associated RING domain 1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102927773, updated on 10-Mar-2024

Summary

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Gene symbol
Bard1
Gene description
BRCA1 associated RING domain 1
See related
Ensembl:ENSPEMG00000009105
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 13 NC_056020.1 (40840797..40915133)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501055.1 (10396904..10469802)

Chromosome 13 - NC_056020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121822071 Neighboring gene ADP-ribosylation factor-like protein 1 Neighboring gene ATP binding cassette subfamily A member 12 Neighboring gene uncharacterized LOC121822072 Neighboring gene von Willebrand factor C domain containing 2 like Neighboring gene sperm associated antigen 16 Neighboring gene uncharacterized LOC121822073

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BRCA1-associated RING domain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056020.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    40840797..40915133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042260171.1 → XP_042116105.1  BRCA1-associated RING domain protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9L2V5
    Conserved Domains (5) summary
    COG0666
    Location:407 → 553
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:412 → 443
    ANK; ANK repeat [structural motif]
    cd16496
    Location:41 → 85
    RING-HC_BARD1; RING finger, HC subclass, found in BRCA1-associated RING domain protein 1 (BARD-1) and similar proteins
    cd17720
    Location:657 → 757
    BRCT_Bard1_rpt2; second (C-terminal) BRCT domain of BRCA1-associated RING domain protein 1 (Bard1) and similar proteins
    cd17734
    Location:556 → 632
    BRCT_Bard1_rpt1; first BRCT domain of BRCA1-associated RING domain protein 1 (Bard1) and similar proteins

  2. XM_006972245.3 → XP_006972307.2  BRCA1-associated RING domain protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I9L2V5, A0A8C8T5P0
    Conserved Domains (5) summary
    COG0666
    Location:407 → 542
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:412 → 443
    ANK; ANK repeat [structural motif]
    cd16496
    Location:41 → 85
    RING-HC_BARD1; RING finger, HC subclass, found in BRCA1-associated RING domain protein 1 (BARD-1) and similar proteins
    cd17720
    Location:656 → 756
    BRCT_Bard1_rpt2; second (C-terminal) BRCT domain of BRCA1-associated RING domain protein 1 (Bard1) and similar proteins
    cd17734
    Location:555 → 631
    BRCT_Bard1_rpt1; first BRCT domain of BRCA1-associated RING domain protein 1 (Bard1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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