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Sox17 SRY-box transcription factor 17 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102926468, updated on 10-Mar-2024

Summary

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Gene symbol
Sox17
Gene description
SRY-box transcription factor 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Sox17 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 2 NC_056009.1 (37844755..37850220, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501755.1 (615874..621332, complement)

Chromosome 2 - NC_056009.1Genomic Context describing neighboring genes Neighboring gene 7,8-dihydro-8-oxoguanine triphosphatase-like Neighboring gene probable UDP-sugar transporter protein SLC35A4 Neighboring gene 40S ribosomal protein S11-like Neighboring gene uncharacterized LOC121827550

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vasculogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-17
Names
SRY (sex determining region Y)-box 17
SRY-box 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056009.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    37844755..37850220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042270901.1 → XP_042126835.1  transcription factor SOX-17

    UniProtKB/TrEMBL
    A0A6J0CKX7
    Conserved Domains (2) summary
    cd01388
    Location:67 → 138
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12067
    Location:203 → 253
    Sox17_18_mid; Sox 17/18 central domain

  2. XM_015987701.2 → XP_015843187.1  transcription factor SOX-17

    UniProtKB/TrEMBL
    A0A6J0CKX7
    Conserved Domains (2) summary
    cd01388
    Location:67 → 138
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12067
    Location:203 → 253
    Sox17_18_mid; Sox 17/18 central domain

  3. XM_042270899.1 → XP_042126833.1  transcription factor SOX-17

    UniProtKB/TrEMBL
    A0A6J0CKX7
    Conserved Domains (2) summary
    cd01388
    Location:67 → 138
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12067
    Location:203 → 253
    Sox17_18_mid; Sox 17/18 central domain
Nucleotide Protein
Heading Accession and Version

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