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Scarb1 scavenger receptor class B member 1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102921078, updated on 10-Mar-2024

Summary

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Gene symbol
Scarb1
Gene description
scavenger receptor class B member 1
See related
Ensembl:ENSPEMG00000016880
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
13
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 23 NC_056030.1 (16595290..16663080, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501042.1 (2627937..2695863)

Chromosome 23 - NC_056030.1Genomic Context describing neighboring genes Neighboring gene refilin A Neighboring gene nuclear receptor corepressor 2 Neighboring gene uncharacterized LOC121825514 Neighboring gene 40S ribosomal protein S26-like Neighboring gene uncharacterized LOC121825525 Neighboring gene uncharacterized LOC121825526

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables low-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol import IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in recognition of apoptotic cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in caveola IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scavenger receptor class B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056030.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    16595290..16663080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006970669.3 → XP_006970731.1  scavenger receptor class B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I9KTV6
    Related
    ENSPEMP00000018210.1
    Conserved Domains (1) summary
    pfam01130
    Location:18 → 447
    CD36; CD36 family

  2. XM_006970668.3 → XP_006970730.1  scavenger receptor class B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0D972
    Conserved Domains (1) summary
    pfam01130
    Location:18 → 447
    CD36; CD36 family

  3. XM_015996034.2 → XP_015851520.1  scavenger receptor class B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0D972
    Related
    ENSPEMP00000018212.1
    Conserved Domains (1) summary
    pfam01130
    Location:18 → 447
    CD36; CD36 family
Nucleotide Protein
Heading Accession and Version

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