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Afg2b AFG2 AAA ATPase homolog B [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102920838, updated on 10-Mar-2024

Summary

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Gene symbol
Afg2b
Gene description
AFG2 AAA ATPase homolog B
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Also known as
Spata5l1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 4 NC_056011.1 (96378552..96391903)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501196.1 (1559444..1574938, complement)

Chromosome 4 - NC_056011.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 2A catalytic subunit Neighboring gene uncharacterized LOC121829114 Neighboring gene chromosome 4 C15orf48 homolog Neighboring gene solute carrier family 30 member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 5-like protein 1
Names
spermatogenesis associated 5 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056011.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    96378552..96391903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042276117.1 → XP_042132051.1  spermatogenesis-associated protein 5-like protein 1 isoform X2

    Conserved Domains (1) summary
    TIGR01243
    Location:14 → 670
    CDC48; AAA family ATPase, CDC48 subfamily

  2. XM_015999888.2 → XP_015855374.2  spermatogenesis-associated protein 5-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0DK79
    Conserved Domains (1) summary
    TIGR01243
    Location:14 → 740
    CDC48; AAA family ATPase, CDC48 subfamily
Nucleotide Protein
Heading Accession and Version

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