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Sema6c semaphorin 6C [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102920433, updated on 10-Mar-2024

Summary

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Gene symbol
Sema6c
Gene description
semaphorin 6C
See related
Ensembl:ENSPEMG00000024024
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
23
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 6 NC_056013.1 (71151937..71165435)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501216.1 (113349..126854)

Chromosome 6 - NC_056013.1Genomic Context describing neighboring genes Neighboring gene LysM domain containing 1 Neighboring gene TNF alpha induced protein 8 like 2 Neighboring gene GA binding protein transcription factor subunit beta 2 Neighboring gene MLLT11 transcription factor 7 cofactor Neighboring gene CDC42 small effector 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6C
Names
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056013.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    71151937..71165435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042280308.1 → XP_042136242.1  semaphorin-6C

    UniProtKB/TrEMBL
    A0A6I9LQE5, A0A8C8UFL1
    Conserved Domains (2) summary
    pfam01437
    Location:518 → 555
    PSI; Plexin repeat
    cl15693
    Location:53 → 517
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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