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Katnb1 katanin regulatory subunit B1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102920332, updated on 10-Mar-2024

Summary

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Gene symbol
Katnb1
Gene description
katanin regulatory subunit B1
See related
Ensembl:ENSPEMG00000000120
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 5 NC_056012.1 (9538967..9558443, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501286.1 (1939067..1958799)

Chromosome 5 - NC_056012.1Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel subunit beta 1 Neighboring gene kinesin family member C3 Neighboring gene uncharacterized LOC121829322 Neighboring gene dynein regulatory complex subunit 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule depolymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule severing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of katanin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
katanin p80 WD40 repeat-containing subunit B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056012.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    9538967..9558443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006985242.3 → XP_006985304.1  katanin p80 WD40 repeat-containing subunit B1

    UniProtKB/TrEMBL
    A0A6J0DX82, A0A6J0E1R9
    Conserved Domains (5) summary
    COG2319
    Location:6 → 295
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam07259
    Location:366 → 451
    ProSAAS; ProSAAS precursor
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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