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Pdzk1 PDZ domain containing 1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102912268, updated on 10-Mar-2024

Summary

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Gene symbol
Pdzk1
Gene description
PDZ domain containing 1
See related
Ensembl:ENSPEMG00000009898
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 6 NC_056013.1 (72839737..72875562)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501216.1 (1797395..1829281)

Chromosome 6 - NC_056013.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 115 Neighboring gene CD160 molecule Neighboring gene G protein-coupled receptor 89A Neighboring gene gap junction protein alpha 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-membrane adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Na(+)/H(+) exchange regulatory cofactor NHE-RF3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056013.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    72839737..72875562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042280313.1 → XP_042136247.1  Na(+)/H(+) exchange regulatory cofactor NHE-RF3

    Conserved Domains (2) summary
    smart00228
    Location:264 → 344
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:130 → 209
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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