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Zic5 Zic family member 5 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102912124, updated on 10-Mar-2024

Summary

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Gene symbol
Zic5
Gene description
Zic family member 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 9 NC_056016.1 (105596883..105605495)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501145.1 (4652416..4658667, complement)

Chromosome 9 - NC_056016.1Genomic Context describing neighboring genes Neighboring gene propionyl-CoA carboxylase subunit alpha Neighboring gene Zic family member 2 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC121832416 Neighboring gene citramalyl-CoA lyase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ZIC 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056016.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    105596883..105605495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006978792.3 → XP_006978854.1  zinc finger protein ZIC 5

    UniProtKB/TrEMBL
    A0A6I9LH91, A0A8C8TCQ5
    Conserved Domains (4) summary
    COG5048
    Location:306 → 468
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:342 → 362
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:428 → 452
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:384 → 411
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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