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Atxn1 ataxin 1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102907602, updated on 10-Mar-2024

Summary

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Gene symbol
Atxn1
Gene description
ataxin 1
See related
Ensembl:ENSPEMG00000014930
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Atxn1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 5 NC_056012.1 (120963293..121371188, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501062.1 (10079112..10486171, complement)

Chromosome 5 - NC_056012.1Genomic Context describing neighboring genes Neighboring gene myosin regulatory light chain interacting protein Neighboring gene guanosine monophosphate reductase Neighboring gene uncharacterized LOC121829604 Neighboring gene uncharacterized LOC121829605

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056012.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    120963293..121371188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042278411.1 → XP_042134345.1  ataxin-1

    UniProtKB/TrEMBL
    A0A6J0CU26, A0A8C8TTL3
    Conserved Domains (2) summary
    smart00536
    Location:548 → 663
    AXH; domain in Ataxins and HMG containing proteins
    PHA03247
    Location:89 → 492
    PHA03247; large tegument protein UL36; Provisional

  2. XM_006972836.3 → XP_006972898.1  ataxin-1

    See identical proteins and their annotated locations for XP_006972898.1

    UniProtKB/TrEMBL
    A0A6J0CU26, A0A8C8TTL3
    Conserved Domains (2) summary
    smart00536
    Location:548 → 663
    AXH; domain in Ataxins and HMG containing proteins
    PHA03247
    Location:89 → 492
    PHA03247; large tegument protein UL36; Provisional

  3. XM_006972834.3 → XP_006972896.1  ataxin-1

    See identical proteins and their annotated locations for XP_006972896.1

    UniProtKB/TrEMBL
    A0A6J0CU26, A0A8C8TTL3
    Conserved Domains (2) summary
    smart00536
    Location:548 → 663
    AXH; domain in Ataxins and HMG containing proteins
    PHA03247
    Location:89 → 492
    PHA03247; large tegument protein UL36; Provisional

  4. XM_042278410.1 → XP_042134344.1  ataxin-1

    UniProtKB/TrEMBL
    A0A6J0CU26, A0A8C8TTL3
    Conserved Domains (2) summary
    smart00536
    Location:548 → 663
    AXH; domain in Ataxins and HMG containing proteins
    PHA03247
    Location:89 → 492
    PHA03247; large tegument protein UL36; Provisional

  5. XM_006972835.3 → XP_006972897.1  ataxin-1

    See identical proteins and their annotated locations for XP_006972897.1

    UniProtKB/TrEMBL
    A0A6J0CU26, A0A8C8TTL3
    Conserved Domains (2) summary
    smart00536
    Location:548 → 663
    AXH; domain in Ataxins and HMG containing proteins
    PHA03247
    Location:89 → 492
    PHA03247; large tegument protein UL36; Provisional

  6. XM_015991135.2 → XP_015846621.1  ataxin-1

    UniProtKB/TrEMBL
    A0A6J0CU26, A0A8C8TTL3
    Conserved Domains (2) summary
    smart00536
    Location:548 → 663
    AXH; domain in Ataxins and HMG containing proteins
    PHA03247
    Location:89 → 492
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
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