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Snx2 sorting nexin 2 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102906234, updated on 10-Mar-2024

Summary

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Gene symbol
Snx2
Gene description
sorting nexin 2
See related
Ensembl:ENSPEMG00000019987
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
17
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 19 NC_056026.1 (42466503..42509836)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501369.1 (2848418..2892090)

Chromosome 19 - NC_056026.1Genomic Context describing neighboring genes Neighboring gene synuclein alpha interacting protein Neighboring gene uncharacterized LOC121823923 Neighboring gene uncharacterized LOC121823924 Neighboring gene sorting nexin 24 Neighboring gene peptidylprolyl isomerase C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056026.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    42466503..42509836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016006007.2 → XP_015861493.1  sorting nexin-2 isoform X1

    UniProtKB/TrEMBL
    A0A6J0E4G0
    Conserved Domains (4) summary
    cd07282
    Location:142 → 265
    PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
    COG5391
    Location:51 → 513
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
    pfam03700
    Location:49 → 112
    Sorting_nexin; Sorting nexin, N-terminal domain
    cl12013
    Location:283 → 520
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

  2. XM_006987484.2 → XP_006987546.1  sorting nexin-2 isoform X2

    UniProtKB/TrEMBL
    A0A6I9LNZ3
    Related
    ENSPEMP00000022701.1
    Conserved Domains (4) summary
    cd07282
    Location:142 → 265
    PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
    COG5391
    Location:51 → 509
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
    pfam03700
    Location:49 → 112
    Sorting_nexin; Sorting nexin, N-terminal domain
    cl12013
    Location:283 → 516
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

  3. XM_042263739.1 → XP_042119673.1  sorting nexin-2 isoform X3

    Conserved Domains (2) summary
    cd07282
    Location:83 → 206
    PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
    cl12013
    Location:224 → 461
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
Nucleotide Protein
Heading Accession and Version

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