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Ythdc1 YTH N6-methyladenosine RNA binding protein C1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102905181, updated on 10-Mar-2024

Summary

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Gene symbol
Ythdc1
Gene description
YTH N6-methyladenosine RNA binding protein C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 10 NC_056017.1 (78542773..78655815, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501246.1 (676708..769123, complement)

Chromosome 10 - NC_056017.1Genomic Context describing neighboring genes Neighboring gene UDP-glucuronosyltransferase 2B31-like Neighboring gene UDP-glucuronosyltransferase 2B31-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC121820939 Neighboring gene transmembrane serine protease 11E Neighboring gene transmembrane serine protease 11B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N6-methyladenosine-containing RNA reader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
YTH domain-containing protein 1
Names
YTH domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056017.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    78542773..78655815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042257595.1 → XP_042113529.1  YTH domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C8TPR4

  2. XM_042257594.1 → XP_042113528.1  YTH domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C8TPR4

  3. XM_042257593.1 → XP_042113527.1  YTH domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C8TG25

  4. XM_042257592.1 → XP_042113526.1  YTH domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C8TG25
Nucleotide Protein
Heading Accession and Version

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