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ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit [ Pteropus alecto (black flying fox) ]

Gene ID: 102891932, updated on 30-Mar-2024

Summary

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Gene symbol
ERCC1
Gene description
ERCC excision repair 1, endonuclease non-catalytic subunit
Locus tag
PAL_GLEAN10004025
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006436281.1 (1316745..1331702, complement)

NW_006436281.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene protein phosphatase 1 regulatory subunit 13 like Neighboring gene RNA polymerase I subunit G Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC107195667 Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006436281 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UV-damage excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ERCC4-ERCC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA excision repair protein ERCC-1
Names
excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006436281.1 Reference ASM32557v1 Primary Assembly

    Range
    1316745..1331702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015589326.2 → XP_015444812.1  DNA excision repair protein ERCC-1 isoform X2

    UniProtKB/TrEMBL
    L5KQ08
    Conserved Domains (2) summary
    pfam03834
    Location:96 → 209
    Rad10; Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
    pfam14520
    Location:235 → 287
    HHH_5; Helix-hairpin-helix domain

  2. XM_006911798.3 → XP_006911860.1  DNA excision repair protein ERCC-1 isoform X2

    See identical proteins and their annotated locations for XP_006911860.1

    UniProtKB/TrEMBL
    L5KQ08
    Conserved Domains (2) summary
    pfam03834
    Location:96 → 209
    Rad10; Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
    pfam14520
    Location:235 → 287
    HHH_5; Helix-hairpin-helix domain

  3. XM_015589324.2 → XP_015444810.1  DNA excision repair protein ERCC-1 isoform X2

    UniProtKB/TrEMBL
    L5KQ08
    Conserved Domains (2) summary
    pfam03834
    Location:96 → 209
    Rad10; Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
    pfam14520
    Location:235 → 287
    HHH_5; Helix-hairpin-helix domain

  4. XM_025046694.1 → XP_024902462.1  DNA excision repair protein ERCC-1 isoform X1

    UniProtKB/TrEMBL
    L5KQ08
    Conserved Domains (3) summary
    pfam03834
    Location:136 → 249
    Rad10; Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
    cl27456
    Location:287 → 327
    UvrC; Excinuclease UvrABC, nuclease subunit [Replication, recombination and repair]
    cl27975
    Location:47 → 143
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  5. XM_015589325.2 → XP_015444811.1  DNA excision repair protein ERCC-1 isoform X2

    UniProtKB/TrEMBL
    L5KQ08
    Conserved Domains (2) summary
    pfam03834
    Location:96 → 209
    Rad10; Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
    pfam14520
    Location:235 → 287
    HHH_5; Helix-hairpin-helix domain
Nucleotide Protein
Heading Accession and Version

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