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COL14A1 collagen type XIV alpha 1 chain [ Pteropus alecto (black flying fox) ]

Gene ID: 102889418, updated on 30-Mar-2024

Summary

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Gene symbol
COL14A1
Gene description
collagen type XIV alpha 1 chain
Locus tag
PAL_GLEAN10021402
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
48
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006439568.1 (6727197..6923290, complement)

NW_006439568.1Genomic Context describing neighboring genes Neighboring gene MDM2 binding protein Neighboring gene mitochondrial ribosomal protein L13 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene protein limb expression 1 homolog pseudogene Neighboring gene 5S ribosomal RNA Neighboring gene DEP domain containing MTOR interacting protein Neighboring gene transcription factor BTF3 pseudogene Neighboring gene DNA replication and sister chromatid cohesion 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006439568 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in interstitial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain
Names
Collagen alpha-1(XIV) chain
collagen, type XIV, alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006439568.1 Reference ASM32557v1 Primary Assembly

    Range
    6727197..6923290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015592952.1 → XP_015448438.1  LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain

    UniProtKB/TrEMBL
    L5KDL1
    Conserved Domains (6) summary
    pfam01391
    Location:1481 → 1600
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:630 → 701
    FN3; Fibronectin type 3 domain
    smart00210
    Location:1230 → 1425
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:536 → 621
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1032 → 1196
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:831 → 909
    fn3; Fibronectin type III domain
Nucleotide Protein
Heading Accession and Version

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