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USP47 ubiquitin specific peptidase 47 [ Pteropus alecto (black flying fox) ]

Gene ID: 102889290, updated on 30-Mar-2024

Summary

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Gene symbol
USP47
Gene description
ubiquitin specific peptidase 47
Locus tag
PAL_GLEAN10007471
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See USP47 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006431079.1 (3107048..3203525)

NW_006431079.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 18 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC107196335 Neighboring gene dickkopf WNT signaling pathway inhibitor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006431079 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of bat genomes provides insight into the evolution of flight and immunity. Zhang G, et al. Science, 2013 Jan 25. PMID 23258410, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 47
Names
Ubiquitin carboxyl-terminal hydrolase 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006431079.1 Reference ASM32557v1 Primary Assembly

    Range
    3107048..3203525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015596478.2 → XP_015451964.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X1

    Conserved Domains (2) summary
    cd02659
    Location:186 → 566
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:187 → 561
    UCH; Ubiquitin carboxyl-terminal hydrolase

  2. XM_006905642.3 → XP_006905704.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X3

    See identical proteins and their annotated locations for XP_006905704.1

    UniProtKB/TrEMBL
    L5L435
    Conserved Domains (2) summary
    cd02659
    Location:166 → 546
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:167 → 541
    UCH; Ubiquitin carboxyl-terminal hydrolase

  3. XM_015596479.2 → XP_015451965.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X2

    Conserved Domains (1) summary
    cd02659
    Location:186 → 566
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_025038564.1 → XP_024894332.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X4

    Conserved Domains (1) summary
    cd02659
    Location:86 → 466
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein
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