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CTNS cystinosin, lysosomal cystine transporter [ Pteropus alecto (black flying fox) ]

Gene ID: 102878356, updated on 30-Mar-2024

Summary

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Gene symbol
CTNS
Gene description
cystinosin, lysosomal cystine transporter
Locus tag
PAL_GLEAN10010074
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Also known as
Cystinosin
Orthologs
human mouse all
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Genomic context

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See CTNS in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006442497.1 (338208..355167)

NW_006442497.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily V member 1 Neighboring gene sedoheptulokinase Neighboring gene Tax1 binding protein 3 Neighboring gene ER membrane protein complex subunit 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006442497 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-cystine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-cystine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cystinosin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006442497.1 Reference ASM32557v1 Primary Assembly

    Range
    338208..355167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006922201.3 → XP_006922263.2  cystinosin isoform X4

    Conserved Domains (3) summary
    TIGR00951
    Location:224 → 456
    2A43; Lysosomal Cystine Transporter
    pfam04193
    Location:227 → 283
    PQ-loop; PQ loop repeat
    pfam15087
    Location:9 → 105
    DUF4551; Protein of unknown function (DUF4551)

  2. XM_015597424.2 → XP_015452910.1  cystinosin isoform X2

    Conserved Domains (3) summary
    TIGR00951
    Location:224 → 399
    2A43; Lysosomal Cystine Transporter
    pfam04193
    Location:227 → 283
    PQ-loop; PQ loop repeat
    pfam15087
    Location:9 → 105
    DUF4551; Protein of unknown function (DUF4551)

  3. XM_006922200.3 → XP_006922262.1  cystinosin isoform X3

    See identical proteins and their annotated locations for XP_006922262.1

    Conserved Domains (2) summary
    TIGR00951
    Location:146 → 378
    2A43; Lysosomal Cystine Transporter
    pfam04193
    Location:149 → 205
    PQ-loop; PQ loop repeat

  4. XM_006922199.3 → XP_006922261.1  cystinosin isoform X3

    See identical proteins and their annotated locations for XP_006922261.1

    Conserved Domains (2) summary
    TIGR00951
    Location:146 → 378
    2A43; Lysosomal Cystine Transporter
    pfam04193
    Location:149 → 205
    PQ-loop; PQ loop repeat

  5. XM_006922198.3 → XP_006922260.2  cystinosin isoform X1

    Conserved Domains (3) summary
    TIGR00951
    Location:224 → 456
    2A43; Lysosomal Cystine Transporter
    pfam04193
    Location:227 → 283
    PQ-loop; PQ loop repeat
    pfam15087
    Location:9 → 105
    DUF4551; Protein of unknown function (DUF4551)
Nucleotide Protein
Heading Accession and Version

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