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COL11A2 collagen type XI alpha 2 chain [ Elephantulus edwardii (Cape elephant shrew) ]

Gene ID: 102868717, updated on 10-Mar-2024

Summary

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Gene symbol
COL11A2
Gene description
collagen type XI alpha 2 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Elephantulus edwardii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
66
Annotation release Status Assembly Chr Location
100 current EleEdw1.0 (GCF_000299155.1) Unplaced Scaffold NW_006399767.1 (29020978..29056994)

NW_006399767.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 7 Neighboring gene retinoid X receptor beta Neighboring gene BUB3 mitotic checkpoint protein pseudogene Neighboring gene HLA class II histocompatibility antigen, DP beta 1 chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006399767 unplaced scaffold reference EleEdw1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-2(XI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Elephantulus edwardii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EleEdw1.0

Genomic

  1. NW_006399767.1 Reference EleEdw1.0

    Range
    29020978..29056994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006882100.1 → XP_006882162.1  collagen alpha-2(XI) chain

    Conserved Domains (3) summary
    pfam01391
    Location:654 → 710
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1540 → 1735
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:32 → 213
    TSPN; Thrombospondin N-terminal -like domains

  2. XM_006882101.1 → XP_006882163.1  collagen alpha-2(XI) chain

    Conserved Domains (3) summary
    pfam01391
    Location:568 → 624
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1454 → 1649
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:32 → 213
    TSPN; Thrombospondin N-terminal -like domains

  3. XM_006882102.1 → XP_006882164.1  collagen alpha-2(XI) chain

    Conserved Domains (3) summary
    pfam01391
    Location:547 → 603
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1433 → 1628
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:32 → 213
    TSPN; Thrombospondin N-terminal -like domains
Nucleotide Protein
Heading Accession and Version

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