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PRDM5 PR/SET domain 5 [ Elephantulus edwardii (Cape elephant shrew) ]

Gene ID: 102849402, updated on 10-Mar-2024

Summary

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Gene symbol
PRDM5
Gene description
PR/SET domain 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Elephantulus edwardii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus
Orthologs
human mouse all
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Genomic context

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See PRDM5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current EleEdw1.0 (GCF_000299155.1) Unplaced Scaffold NW_006399762.1 (5914136..6255181)

NW_006399762.1Genomic Context describing neighboring genes Neighboring gene disintegrin and metalloproteinase domain-containing protein 20-like Neighboring gene neuron derived neurotrophic factor Neighboring gene guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like Neighboring gene high mobility group protein B1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006399762 unplaced scaffold reference EleEdw1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Elephantulus edwardii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EleEdw1.0

Genomic

  1. NW_006399762.1 Reference EleEdw1.0

    Range
    5914136..6255181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006881055.1 → XP_006881117.1  PR domain zinc finger protein 5

    Conserved Domains (4) summary
    smart00317
    Location:20 → 130
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:262 → 621
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:491 → 511
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:532 → 556
    zf-H2C2_2; Zinc-finger double domain

  2. XM_006881056.1 → XP_006881118.1  PR domain zinc finger protein 5

    Conserved Domains (4) summary
    smart00317
    Location:20 → 130
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:197 → 590
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:460 → 480
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:501 → 525
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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