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NIPBL NIPBL cohesin loading factor [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102842849, updated on 10-Mar-2024

Summary

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Gene symbol
NIPBL
Gene description
NIPBL cohesin loading factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
47
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408948.1 (354751..589228)

NW_006408948.1Genomic Context describing neighboring genes Neighboring gene splicing factor 3A subunit 2-like Neighboring gene succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like Neighboring gene HLA class I histocompatibility antigen, Cw-1 alpha chain-like Neighboring gene ciliogenesis and planar polarity effector complex subunit 1 Neighboring gene nucleoporin 155

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408948 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in digestive tract development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic viscerocranium morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of protein localization to chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cohesin loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication-born double-strand break repair via sister chromatid exchange IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Scc2-Scc4 cohesin loading complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nipped-B-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408948.1 Reference ChrAsi1.0 Primary Assembly

    Range
    354751..589228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006876931.1 → XP_006876993.1  nipped-B-like protein

    UniProtKB/TrEMBL
    A0A9B0X222
    Conserved Domains (6) summary
    pfam07223
    Location:113 → 306
    DUF1421; Protein of unknown function (DUF1421)
    pfam08619
    Location:663 → 892
    Nha1_C; Alkali metal cation/H+ antiporter Nha1 C terminus
    pfam08648
    Location:1102 → 1159
    DUF1777; Protein of unknown function (DUF1777)
    pfam12765
    Location:1793 → 1834
    Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
    pfam12830
    Location:2275 → 2453
    Nipped-B_C; Sister chromatid cohesion C-terminus
    sd00044
    Location:1810 → 1838
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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