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KDM5C lysine demethylase 5C [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102842830, updated on 10-Mar-2024

Summary

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Gene symbol
KDM5C
Gene description
lysine demethylase 5C
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
Orthologs
human mouse all
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Genomic context

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See KDM5C in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408833.1 (196611..228455, complement)

NW_006408833.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 173 Neighboring gene TSPY like 2 Neighboring gene IQ motif and Sec7 domain ArfGEF 2 Neighboring gene small ubiquitin-like modifier 2 pseudogene Neighboring gene structural maintenance of chromosomes 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408833 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 5C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408833.1 Reference ChrAsi1.0 Primary Assembly

    Range
    196611..228455 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006875243.1 → XP_006875305.1  lysine-specific demethylase 5C

    UniProtKB/TrEMBL
    A0A9B0U9S3
    Conserved Domains (7) summary
    smart00501
    Location:80 → 170
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:500 → 616
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:325 → 370
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:706 → 758
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:771 → 1097
    PLU-1; PLU-1-like protein
    cl22851
    Location:1186 → 1246
    PHD_SF; PHD finger superfamily

  2. XM_006875242.1 → XP_006875304.1  lysine-specific demethylase 5C

    UniProtKB/TrEMBL
    A0A9B0U854
    Conserved Domains (7) summary
    smart00501
    Location:80 → 170
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:501 → 617
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:326 → 371
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:707 → 759
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:772 → 1098
    PLU-1; PLU-1-like protein
    cl22851
    Location:1187 → 1247
    PHD_SF; PHD finger superfamily

  3. XM_006875245.1 → XP_006875307.1  lysine-specific demethylase 5C

    UniProtKB/TrEMBL
    A0A9B0U3M4
    Conserved Domains (7) summary
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:440 → 556
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:265 → 310
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:646 → 698
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:711 → 1034
    PLU-1; PLU-1-like protein
    cl02633
    Location:80 → 117
    ARID; ARID/BRIGHT DNA binding domain
    cl22851
    Location:1123 → 1183
    PHD_SF; PHD finger superfamily

  4. XM_006875244.1 → XP_006875306.1  lysine-specific demethylase 5C

    UniProtKB/TrEMBL
    A0A9B0U3W3
    Conserved Domains (7) summary
    smart00501
    Location:80 → 170
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00545
    Location:13 → 54
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:497 → 613
    JmjC; JmjC domain, hydroxylase
    cd15604
    Location:322 → 367
    PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
    pfam02928
    Location:703 → 755
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:768 → 1091
    PLU-1; PLU-1-like protein
    cl22851
    Location:1180 → 1240
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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