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COPA COPI coat complex subunit alpha [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102834933, updated on 10-Mar-2024

Summary

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Gene symbol
COPA
Gene description
COPI coat complex subunit alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408560.1 (20242993..20307243, complement)

NW_006408560.1Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 8 Neighboring gene E2F-associated phosphoprotein-like Neighboring gene peroxisomal biogenesis factor 19 Neighboring gene nicastrin Neighboring gene nescient helix-loop-helix 1 Neighboring gene ornithine decarboxylase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408560 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coatomer subunit alpha
Names
coatomer protein complex subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408560.1 Reference ChrAsi1.0 Primary Assembly

    Range
    20242993..20307243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006861651.1 → XP_006861713.1  coatomer subunit alpha

    UniProtKB/TrEMBL
    A0A9B0TB04
    Conserved Domains (5) summary
    COG2319
    Location:99 → 504
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:9 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04053
    Location:339 → 767
    Coatomer_WDAD; Coatomer WD associated region
    pfam06957
    Location:816 → 1218
    COPI_C; Coatomer (COPI) alpha subunit C-terminus
    sd00039
    Location:15 → 49
    7WD40; WD40 repeat [structural motif]

  2. XM_006861650.1 → XP_006861712.1  coatomer subunit alpha

    UniProtKB/TrEMBL
    A0A9B0TCT9
    Conserved Domains (5) summary
    COG2319
    Location:99 → 504
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:9 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04053
    Location:339 → 776
    Coatomer_WDAD; Coatomer WD associated region
    pfam06957
    Location:825 → 1227
    COPI_C; Coatomer (COPI) alpha subunit C-terminus
    sd00039
    Location:15 → 49
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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