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ZSCAN20 zinc finger and SCAN domain containing 20 [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102817876, updated on 10-Mar-2024

Summary

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Gene symbol
ZSCAN20
Gene description
zinc finger and SCAN domain containing 20
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408565.1 (1121481..1139693, complement)

NW_006408565.1Genomic Context describing neighboring genes Neighboring gene CUB and Sushi multiple domains 2 Neighboring gene high mobility group box 4 Neighboring gene transmembrane protein 183A-like Neighboring gene toll-like receptor 12-like Neighboring gene polyhomeotic homolog 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408565 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408565.1 Reference ChrAsi1.0 Primary Assembly

    Range
    1121481..1139693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006862362.1 → XP_006862424.1  zinc finger and SCAN domain-containing protein 20

    UniProtKB/TrEMBL
    A0A9B0WLW2
    Conserved Domains (6) summary
    COG5048
    Location:710 → 1031
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:712 → 732
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:961 → 983
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:49 → 134
    SCAN; SCAN domain
    pfam13465
    Location:752 → 776
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:483 → 564
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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