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CCDC88A coiled-coil domain containing 88A [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102817288, updated on 10-Mar-2024

Summary

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Gene symbol
CCDC88A
Gene description
coiled-coil domain containing 88A
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408632.1 (1017529..1189013, complement)

NW_006408632.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2, mitochondrial-like Neighboring gene zinc finger CCHC-type and RNA-binding motif-containing protein 1-like Neighboring gene prolyl-tRNA synthetase associated domain-containing protein 1-like Neighboring gene cilia and flagella associated protein 36 Neighboring gene protein phosphatase 4 regulatory subunit 3B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408632 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein light intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent intracellular transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
girdin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408632.1 Reference ChrAsi1.0 Primary Assembly

    Range
    1017529..1189013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006868012.1 → XP_006868074.1  girdin

    UniProtKB/TrEMBL
    A0A9B0TUR5
    Conserved Domains (6) summary
    TIGR04523
    Location:497 → 1205
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam05622
    Location:18 → 584
    HOOK; HOOK protein
    pfam06156
    Location:1061 → 1107
    DUF972; Protein of unknown function (DUF972)
    pfam10211
    Location:613 → 702
    Ax_dynein_light; Axonemal dynein light chain
    cl09111
    Location:766 → 859
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl19252
    Location:825 → 943
    MreC; rod shape-determining protein MreC

  2. XM_006868013.1 → XP_006868075.1  girdin

    UniProtKB/TrEMBL
    A0A9B0TW65
    Conserved Domains (6) summary
    TIGR04523
    Location:497 → 1204
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam05622
    Location:18 → 584
    HOOK; HOOK protein
    pfam06156
    Location:1060 → 1106
    DUF972; Protein of unknown function (DUF972)
    pfam10211
    Location:613 → 702
    Ax_dynein_light; Axonemal dynein light chain
    cl09111
    Location:766 → 859
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl19252
    Location:825 → 943
    MreC; rod shape-determining protein MreC

  3. XM_006868011.1 → XP_006868073.1  girdin

    UniProtKB/TrEMBL
    A0A9B0TNL3
    Conserved Domains (6) summary
    TIGR04523
    Location:497 → 1205
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam05622
    Location:18 → 584
    HOOK; HOOK protein
    pfam06156
    Location:1061 → 1107
    DUF972; Protein of unknown function (DUF972)
    pfam10211
    Location:613 → 702
    Ax_dynein_light; Axonemal dynein light chain
    cl09111
    Location:766 → 859
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl19252
    Location:825 → 943
    MreC; rod shape-determining protein MreC
Nucleotide Protein
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