U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CAPN1 calpain 1 [ Myotis davidii ]

Gene ID: 102770312, updated on 30-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CAPN1
Gene description
calpain 1
Locus tag
MDA_GLEAN10017916
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis davidii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current ASM32734v1 (GCF_000327345.1) Unplaced Scaffold NW_006296413.1 (3828186..3862784, complement)

NW_006296413.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase alpha 2, accessory subunit Neighboring gene solute carrier family 22 member 20 Neighboring gene speedy/RINGO cell cycle regulator family member C Neighboring gene synoviolin 1 Neighboring gene mitochondrial ribosomal protein L49

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006296413.1 Unplaced Scaffold Reference ASM32734v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calpain-1 catalytic subunit
Names
Calpain-1 catalytic subunit
calpain 1, (mu/I) large subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Myotis davidii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32734v1

Genomic

  1. NW_006296413.1 Reference ASM32734v1

    Range
    3828186..3862784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006771615.2 → XP_006771678.1  calpain-1 catalytic subunit

    UniProtKB/TrEMBL
    L5LEP2
    Conserved Domains (5) summary
    PTZ00184
    Location:533 → 683
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:592 → 646
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam00648
    Location:56 → 352
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:366 → 521
    Calpain_III; Calpain large subunit, domain III
    pfam13833
    Location:563 → 612
    EF-hand_8; EF-hand domain pair
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.