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SUPT5H SPT5 homolog, DSIF elongation factor subunit [ Myotis davidii ]

Gene ID: 102755211, updated on 30-Mar-2024

Summary

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Gene symbol
SUPT5H
Gene description
SPT5 homolog, DSIF elongation factor subunit
Locus tag
MDA_GLEAN10002394
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis davidii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
101 current ASM32734v1 (GCF_000327345.1) Unplaced Scaffold NW_006296541.1 (183721..220666)

NW_006296541.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology and RhoGEF domain containing G2 Neighboring gene ribosomal protein S16 Neighboring gene PRELI domain-containing protein 1, mitochondrial pseudogene Neighboring gene translocase of inner mitochondrial membrane 50 Neighboring gene delta like canonical Notch ligand 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006296541.1 Unplaced Scaffold Reference ASM32734v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DSIF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor SPT5
Names
Transcription elongation factor SPT5
suppressor of Ty 5 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis davidii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32734v1

Genomic

  1. NW_006296541.1 Reference ASM32734v1

    Range
    183721..220666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006771955.2 → XP_006772018.1  transcription elongation factor SPT5

    UniProtKB/TrEMBL
    L5LCJ1
    Conserved Domains (12) summary
    PRK08559
    Location:175 → 316
    nusG; transcription antitermination protein NusG; Validated
    cd09888
    Location:178 → 265
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:334 → 965
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:276 → 313
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06082
    Location:420 → 470
    KOW_Spt5_2; KOW domain of Spt5, repeat 2
    cd06083
    Location:471 → 521
    KOW_Spt5_3; KOW domain of Spt5, repeat 3
    cd06084
    Location:597 → 639
    KOW_Spt5_4; KOW domain of Spt5, repeat 4
    cd06085
    Location:702 → 751
    KOW_Spt5_5; KOW domain of Spt5, repeat 5
    cd06086
    Location:1028 → 1084
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam04731
    Location:847 → 976
    Caudal_act; Caudal like protein activation region
    pfam11942
    Location:93 → 171
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
    pfam12815
    Location:766 → 822
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
Nucleotide Protein
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