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SOX8 SRY-box transcription factor 8 [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102745057, updated on 10-Mar-2024

Summary

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Gene symbol
SOX8
Gene description
SRY-box transcription factor 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SOX8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006384054.1 (467794..472620)

NW_006384054.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115942893 Neighboring gene lipase maturation factor 1 Neighboring gene ubiquitin-conjugating enzyme E2 C pseudogene Neighboring gene lipase maturation factor 1-like Neighboring gene somatostatin receptor 5 Neighboring gene C1q and TNF related 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006384054 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in enteric nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peripheral nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-8
Names
SRY-box 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006384054.1 Reference LepWed1.0 Primary Assembly

    Range
    467794..472620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006739110.2 → XP_006739173.1  transcription factor SOX-8

    UniProtKB/TrEMBL
    A0A2U3Y6D3
    Conserved Domains (3) summary
    PRK10263
    Location:196 → 407
    PRK10263; DNA translocase FtsK; Provisional
    cd01388
    Location:51 → 121
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12444
    Location:1 → 39
    Sox_N; Sox developmental protein N terminal
Nucleotide Protein
Heading Accession and Version

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