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LOC102743263 calpain-9 [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102743263, updated on 9-Nov-2023

Summary

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Gene symbol
LOC102743263
Gene description
calpain-9
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Also known as
CAPN9
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC102743263 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006386947.1 (93435..117913)

NW_006386947.1Genomic Context describing neighboring genes Neighboring gene conserved oligomeric Golgi complex subunit 2-like Neighboring gene angiotensinogen

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006386947 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006386947.1 Reference LepWed1.0 Primary Assembly

    Range
    93435..117913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006750549.1 → XP_006750612.1  calpain-9

    UniProtKB/TrEMBL
    A0A2U3Z3N1
    Conserved Domains (4) summary
    cd00214
    Location:155 → 304
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:330 → 358
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:330 → 492
    EFh_PEF; The penta-EF hand (PEF) family
    cl00051
    Location:72 → 143
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Nucleotide Protein
Heading Accession and Version

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