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PSPC1 paraspeckle component 1 [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102732907, updated on 10-Mar-2024

Summary

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Gene symbol
PSPC1
Gene description
paraspeckle component 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006384561.1 (1315..106158, complement)

NW_006384561.1Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type containing 5 Neighboring gene zinc finger MYM-type containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006384561 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paraspeckle component 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006384561.1 Reference LepWed1.0 Primary Assembly

    Range
    1315..106158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031038334.1 → XP_030894194.1  paraspeckle component 1 isoform X2

    UniProtKB/TrEMBL
    A0A7F8RMA6
    Conserved Domains (3) summary
    cd12589
    Location:155 → 234
    RRM2_PSP1; RNA recognition motif 2 (RRM2) found in vertebrate paraspeckle protein 1 (PSP1 or PSPC1)
    cl06904
    Location:225 → 317
    eNOPS_SF; NOPS domain, including C-terminal helical extension region, in the p54nrb/PSF/PSP1 family
    cl17169
    Location:79 → 149
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_006742608.2 → XP_006742671.2  paraspeckle component 1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3YG24
    Conserved Domains (3) summary
    cd12946
    Location:225 → 317
    NOPS_p54nrb_PSF_PSPC1; NOPS domain, including C-terminal coiled-coil region, in p54nrb/PSF/PSPC1 family proteins
    cd12586
    Location:79 → 149
    RRM1_PSP1; RNA recognition motif 1 (RRM1) found in vertebrate paraspeckle protein 1 (PSP1)
    cd12589
    Location:155 → 234
    RRM2_PSP1; RNA recognition motif 2 (RRM2) found in vertebrate paraspeckle protein 1 (PSP1 or PSPC1)

  3. XM_031038335.1 → XP_030894195.1  paraspeckle component 1 isoform X3

    UniProtKB/TrEMBL
    A0A7F8RLI2
    Conserved Domains (3) summary
    cd12946
    Location:225 → 317
    NOPS_p54nrb_PSF_PSPC1; NOPS domain, including C-terminal coiled-coil region, in p54nrb/PSF/PSPC1 family proteins
    cd12589
    Location:155 → 234
    RRM2_PSP1; RNA recognition motif 2 in vertebrate paraspeckle protein 1 (PSP1 or PSPC1)
    cl17169
    Location:79 → 149
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_031038336.1 → XP_030894196.1  paraspeckle component 1 isoform X4

    UniProtKB/TrEMBL
    A0A7F8RLV1
    Conserved Domains (3) summary
    cd12949
    Location:225 → 318
    NOPS_PSPC1; NOPS domain, including C-terminal coiled-coil region, in paraspeckle protein component 1 (PSPC1) and similar proteins
    cd12586
    Location:79 → 149
    RRM1_PSP1; RNA recognition motif 1 in vertebrate paraspeckle protein 1 (PSP1)
    cd12589
    Location:155 → 234
    RRM2_PSP1; RNA recognition motif 2 in vertebrate paraspeckle protein 1 (PSP1 or PSPC1)

RNA

  1. XR_004078647.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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