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BLM BLM RecQ like helicase [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102730276, updated on 10-Mar-2024

Summary

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Gene symbol
BLM
Gene description
BLM RecQ like helicase
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006384531.1 (127478..200928, complement)

NW_006384531.1Genomic Context describing neighboring genes Neighboring gene unc-45 myosin chaperone A Neighboring gene furin-like Neighboring gene transcription factor BTF3 pseudogene Neighboring gene CREB regulated transcription coactivator 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006384531 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA unwinding involved in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in G-quadruplex DNA unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Bloom syndrome protein
Names
Bloom syndrome RecQ like helicase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006384531.1 Reference LepWed1.0 Primary Assembly

    Range
    127478..200928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031038125.1 → XP_030893985.1  Bloom syndrome protein

    UniProtKB/TrEMBL
    A0A7F8RKX0
    Conserved Domains (5) summary
    smart00341
    Location:1138 → 1217
    HRDC; Helicase and RNase D C-terminal
    TIGR00614
    Location:672 → 1068
    recQ_fam; ATP-dependent DNA helicase, RecQ family
    pfam08072
    Location:372 → 411
    BDHCT; BDHCT (NUC031) domain
    pfam16202
    Location:1 → 360
    BLM_N; N-terminal region of Bloom syndrome protein
    pfam16204
    Location:425 → 662
    BDHCT_assoc; BDHCT-box associated domain on Bloom syndrome protein
Nucleotide Protein
Heading Accession and Version

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