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ARNT2 aryl hydrocarbon receptor nuclear translocator 2 [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102727726, updated on 10-Mar-2024

Summary

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Gene symbol
ARNT2
Gene description
aryl hydrocarbon receptor nuclear translocator 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006384154.1 (572973..707635)

NW_006384154.1Genomic Context describing neighboring genes Neighboring gene fumarylacetoacetate hydrolase Neighboring gene cortexin domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006384154 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aryl hydrocarbon receptor nuclear translocator 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006384154.1 Reference LepWed1.0 Primary Assembly

    Range
    572973..707635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031035234.1 → XP_030891094.1  aryl hydrocarbon receptor nuclear translocator 2

    UniProtKB/TrEMBL
    A0A2U3Y8L5

  2. XM_006739982.2 → XP_006740045.2  aryl hydrocarbon receptor nuclear translocator 2

    UniProtKB/TrEMBL
    A0A2U3Y8L5
    Conserved Domains (3) summary
    pfam00989
    Location:126 → 232
    PAS; PAS fold
    pfam14598
    Location:325 → 425
    PAS_11; PAS domain
    cd18947
    Location:51 → 113
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins

  3. XM_031035235.1 → XP_030891095.1  aryl hydrocarbon receptor nuclear translocator 2

    UniProtKB/TrEMBL
    A0A2U3Y8L5
    Conserved Domains (3) summary
    pfam00989
    Location:126 → 232
    PAS; PAS fold
    pfam14598
    Location:325 → 425
    PAS_11; PAS domain
    cd18947
    Location:51 → 113
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
Nucleotide Protein
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