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LOC102714908 putative homeobox protein knotted-1-like 5 [ Oryza brachyantha (malo sina) ]

Gene ID: 102714908, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102714908
Gene description
putative homeobox protein knotted-1-like 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 3 NC_023165.2 (21763764..21768743, complement)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 3 NC_023165.1 (21265306..21270463, complement)

Chromosome 3 - NC_023165.2Genomic Context describing neighboring genes Neighboring gene endo-1,4-beta-xylanase 1-like Neighboring gene homeobox protein knotted-1-like 4 Neighboring gene CSC1-like protein RXW8 Neighboring gene uncharacterized LOC107303795

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative homeobox protein knotted-1-like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023165.2 Reference ObraRS2 Primary Assembly

    Range
    21763764..21768743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006651616.2 → XP_006651679.2  putative homeobox protein knotted-1-like 5

    Conserved Domains (1) summary
    cd00086
    Location:169 → 218
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein
Heading Accession and Version

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