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LOC102712202 transcription factor bHLH81-like [ Oryza brachyantha (malo sina) ]

Gene ID: 102712202, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102712202
Gene description
transcription factor bHLH81-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 1 NC_023163.2 (558332..560035, complement)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 1 NC_023163.1 (528350..530053, complement)

Chromosome 1 - NC_023163.2Genomic Context describing neighboring genes Neighboring gene protein decapping 5-like Neighboring gene uncharacterized LOC102711920 Neighboring gene protein MOTHER of FT and TFL1 homolog 2 Neighboring gene uncharacterized LOC102712757

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH81-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023163.2 Reference ObraRS2 Primary Assembly

    Range
    558332..560035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006643601.1 → XP_006643664.1  transcription factor bHLH81-like

    UniProtKB/TrEMBL
    J3KVS9
    Conserved Domains (1) summary
    cd00083
    Location:189 → 237
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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