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hey1 hes-related family bHLH transcription factor with YRPW motif 1 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102698964, updated on 10-Mar-2024

Summary

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Gene symbol
hey1
Gene description
hes-related family bHLH transcription factor with YRPW motif 1
See related
Ensembl:ENSLOCG00000004692
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG11
Exon count:
5
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG11 NC_023189.1 (11794882..11799474, complement)

Linkage Group LG11 - NC_023189.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107078588 Neighboring gene stathmin 2b Neighboring gene uncharacterized LOC107078599 Neighboring gene citron Rho-interacting kinase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023189.1 Chromosome LG11 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in circulatory system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hairy/enhancer-of-split related with YRPW motif protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023189.1 Reference LepOcu1 Primary Assembly

    Range
    11794882..11799474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006635695.2 → XP_006635758.1  hairy/enhancer-of-split related with YRPW motif protein 1

    UniProtKB/TrEMBL
    W5MB60
    Related
    ENSLOCP00000005619.1, ENSLOCT00000005627.1
    Conserved Domains (2) summary
    smart00511
    Location:119 → 165
    ORANGE; Orange domain
    cd00083
    Location:49 → 106
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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