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tcea2 transcription elongation factor A (SII), 2 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102698449, updated on 10-Mar-2024

Summary

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Gene symbol
tcea2
Gene description
transcription elongation factor A (SII), 2
See related
Ensembl:ENSLOCG00000005363
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG18
Exon count:
10
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG18 NC_023196.1 (11096007..11105444, complement)

Linkage Group LG18 - NC_023196.1Genomic Context describing neighboring genes Neighboring gene LKAAEAR motif containing 1 Neighboring gene regulator of G protein signaling 19 Neighboring gene SRY-box transcription factor 18 Neighboring gene XK, Kell blood group complex subunit-related family, member 7b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023196.1 Chromosome LG18 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor A protein 2
Names
transcription elongation factor A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023196.1 Reference LepOcu1 Primary Assembly

    Range
    11096007..11105444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015365138.1 → XP_015220624.1  transcription elongation factor A protein 2

    UniProtKB/TrEMBL
    W5MDM4
    Related
    ENSLOCP00000006483.1, ENSLOCT00000006491.1
    Conserved Domains (4) summary
    cd00183
    Location:7 → 82
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:256 → 302
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:8 → 303
    TFSII; transcription elongation factor S-II
    pfam07500
    Location:140 → 247
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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