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amigo1 adhesion molecule with Ig-like domain 1 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102694140, updated on 10-Mar-2024

Summary

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Gene symbol
amigo1
Gene description
adhesion molecule with Ig-like domain 1
See related
Ensembl:ENSLOCG00000017942
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
3
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG3 NC_023181.1 (36181903..36189203, complement)

Linkage Group LG3 - NC_023181.1Genomic Context describing neighboring genes Neighboring gene ataxin 7 like 2 Neighboring gene cytochrome b561 domain-containing protein 1 Neighboring gene G protein-coupled receptor 61 Neighboring gene guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023181.1 Chromosome LG3 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amphoterin-induced protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023181.1 Reference LepOcu1 Primary Assembly

    Range
    36181903..36189203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015342558.1 → XP_015198044.1  amphoterin-induced protein 1

    UniProtKB/TrEMBL
    W5NN36
    Conserved Domains (7) summary
    smart00408
    Location:297 → 360
    IGc2; Immunoglobulin C-2 Type
    smart00013
    Location:43 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    smart00410
    Location:291 → 372
    IG_like; Immunoglobulin like
    sd00033
    Location:53 → 70
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:143 → 183
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:119 → 179
    LRR_8; Leucine rich repeat
    cl15307
    Location:230 → 285
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_015342562.1 → XP_015198048.1  amphoterin-induced protein 1

    UniProtKB/TrEMBL
    W5NN36
    Related
    ENSLOCP00000022045.1, ENSLOCT00000022084.1
    Conserved Domains (7) summary
    smart00408
    Location:297 → 360
    IGc2; Immunoglobulin C-2 Type
    smart00013
    Location:43 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    smart00410
    Location:291 → 372
    IG_like; Immunoglobulin like
    sd00033
    Location:53 → 70
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:143 → 183
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:119 → 179
    LRR_8; Leucine rich repeat
    cl15307
    Location:230 → 285
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  3. XM_015342559.1 → XP_015198045.1  amphoterin-induced protein 1

    UniProtKB/TrEMBL
    W5NN36
    Conserved Domains (7) summary
    smart00408
    Location:297 → 360
    IGc2; Immunoglobulin C-2 Type
    smart00013
    Location:43 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    smart00410
    Location:291 → 372
    IG_like; Immunoglobulin like
    sd00033
    Location:53 → 70
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:143 → 183
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:119 → 179
    LRR_8; Leucine rich repeat
    cl15307
    Location:230 → 285
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
Heading Accession and Version

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