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sgpp2 sphingosine-1-phosphate phosphatase 2 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102693517, updated on 10-Mar-2024

Summary

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Gene symbol
sgpp2
Gene description
sphingosine-1-phosphate phosphatase 2
See related
Ensembl:ENSLOCG00000004157
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG14
Exon count:
5
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG14 NC_023192.1 (6762711..6783208, complement)

Linkage Group LG14 - NC_023192.1Genomic Context describing neighboring genes Neighboring gene monoacylglycerol O-acyltransferase 1 Neighboring gene phenylalanyl-tRNA synthetase subunit beta Neighboring gene RING finger protein 224-like Neighboring gene paired box 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023192.1 Chromosome LG14 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023192.1 Reference LepOcu1 Primary Assembly

    Range
    6762711..6783208 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015361009.1 → XP_015216495.1  sphingosine-1-phosphate phosphatase 2 isoform X2

    UniProtKB/TrEMBL
    W5M9C8
    Conserved Domains (1) summary
    cd03388
    Location:104 → 223
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...

  2. XM_015361008.1 → XP_015216494.1  sphingosine-1-phosphate phosphatase 2 isoform X1

    UniProtKB/TrEMBL
    W5M9B3, W5M9C8
    Related
    ENSLOCP00000004972.1, ENSLOCT00000004980.1
    Conserved Domains (2) summary
    COG0671
    Location:94 → 262
    PgpB; Membrane-associated phospholipid phosphatase [Lipid transport and metabolism]
    cd03388
    Location:104 → 253
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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