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usp25 ubiquitin specific peptidase 25 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102691986, updated on 10-Mar-2024

Summary

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Gene symbol
usp25
Gene description
ubiquitin specific peptidase 25
See related
Ensembl:ENSLOCG00000000838
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
27
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG3 NC_023181.1 (201734..236645, complement)

Linkage Group LG3 - NC_023181.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107076717 Neighboring gene uncharacterized LOC107076716 Neighboring gene uncharacterized LOC102683367 Neighboring gene nuclear receptor interacting protein 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023181.1 Chromosome LG3 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein stability IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023181.1 Reference LepOcu1 Primary Assembly

    Range
    201734..236645 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015341369.1 → XP_015196855.1  ubiquitin carboxyl-terminal hydrolase 25 isoform X2

    UniProtKB/TrEMBL
    W5LXU8
    Related
    ENSLOCP00000000955.1, ENSLOCT00000000959.1
    Conserved Domains (3) summary
    cd02665
    Location:169 → 649
    Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14354
    Location:14 → 59
    UBA_UBP25; UBA domain found in ubiquitin carboxyl-terminal hydrolase 25 (UBP25) and similar proteins
    pfam00443
    Location:167 → 407
    UCH; Ubiquitin carboxyl-terminal hydrolase

  2. XM_015341370.1 → XP_015196856.1  ubiquitin carboxyl-terminal hydrolase 25 isoform X3

    UniProtKB/TrEMBL
    W5LXU8
    Conserved Domains (3) summary
    cd02665
    Location:169 → 651
    Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14354
    Location:14 → 59
    UBA_UBP25; UBA domain found in ubiquitin carboxyl-terminal hydrolase 25 (UBP25) and similar proteins
    pfam00443
    Location:167 → 409
    UCH; Ubiquitin carboxyl-terminal hydrolase

  3. XM_015341368.1 → XP_015196854.1  ubiquitin carboxyl-terminal hydrolase 25 isoform X1

    UniProtKB/TrEMBL
    W5LXU8
    Conserved Domains (3) summary
    cd02665
    Location:169 → 651
    Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14354
    Location:14 → 59
    UBA_UBP25; UBA domain found in ubiquitin carboxyl-terminal hydrolase 25 (UBP25) and similar proteins
    pfam00443
    Location:167 → 409
    UCH; Ubiquitin carboxyl-terminal hydrolase

  4. XM_015341371.1 → XP_015196857.1  ubiquitin carboxyl-terminal hydrolase 25 isoform X4

    UniProtKB/TrEMBL
    W5LXU8
    Conserved Domains (3) summary
    cd02665
    Location:169 → 651
    Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14354
    Location:14 → 59
    UBA_UBP25; UBA domain found in ubiquitin carboxyl-terminal hydrolase 25 (UBP25) and similar proteins
    pfam00443
    Location:167 → 409
    UCH; Ubiquitin carboxyl-terminal hydrolase

  5. XM_015341372.1 → XP_015196858.1  ubiquitin carboxyl-terminal hydrolase 25 isoform X5

    UniProtKB/TrEMBL
    W5LXU8
    Conserved Domains (3) summary
    cd02665
    Location:169 → 649
    Peptidase_C19I; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14354
    Location:14 → 59
    UBA_UBP25; UBA domain found in ubiquitin carboxyl-terminal hydrolase 25 (UBP25) and similar proteins
    pfam00443
    Location:167 → 407
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein
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