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nlrc5 NLR family, CARD domain containing 5 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102690565, updated on 10-Mar-2024

Summary

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Gene symbol
nlrc5
Gene description
NLR family, CARD domain containing 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG23
Exon count:
28
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG23 NC_023201.1 (16069139..16088059, complement)

Linkage Group LG23 - NC_023201.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107080040 Neighboring gene uncharacterized LOC107080023 Neighboring gene solute carrier family 12 member 3 Neighboring gene homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 Neighboring gene solute carrier family 12 member 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023201.1 Chromosome LG23 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of MHC class I biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of MHC class II biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NLRC5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023201.1 Reference LepOcu1 Primary Assembly

    Range
    16069139..16088059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015368391.1 → XP_015223877.1  protein NLRC5 isoform X3

    UniProtKB/TrEMBL
    W5MM37
    Conserved Domains (4) summary
    cd00116
    Location:998 → 1218
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:741 → 771
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:868 → 895
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:229 → 400
    NACHT; NACHT domain

  2. XM_015368392.1 → XP_015223878.1  protein NLRC5 isoform X3

    UniProtKB/TrEMBL
    W5MM37
    Conserved Domains (4) summary
    cd00116
    Location:998 → 1218
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:741 → 771
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:868 → 895
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:229 → 400
    NACHT; NACHT domain

  3. XM_015368390.1 → XP_015223876.1  protein NLRC5 isoform X2

    UniProtKB/TrEMBL
    W5MM37
    Conserved Domains (4) summary
    cd00116
    Location:1048 → 1267
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:791 → 821
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:918 → 945
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:279 → 450
    NACHT; NACHT domain

  4. XM_015368389.1 → XP_015223875.1  protein NLRC5 isoform X1

    UniProtKB/TrEMBL
    W5MM37
    Conserved Domains (4) summary
    cd00116
    Location:1048 → 1268
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:791 → 821
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:918 → 945
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:279 → 450
    NACHT; NACHT domain

  5. XM_015368393.1 → XP_015223879.1  protein NLRC5 isoform X4

    Conserved Domains (4) summary
    cd00116
    Location:806 → 1125
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:791 → 821
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:918 → 945
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:279 → 450
    NACHT; NACHT domain
Nucleotide Protein
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