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slc25a13 solute carrier family 25 member 13 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102690140, updated on 10-Mar-2024

Summary

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Gene symbol
slc25a13
Gene description
solute carrier family 25 member 13
See related
Ensembl:ENSLOCG00000010992
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG11
Exon count:
20
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG11 NC_023189.1 (37545087..37607947, complement)

Linkage Group LG11 - NC_023189.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase kinase, isozyme 4 Neighboring gene dynein cytoplasmic 1 intermediate chain 1 Neighboring gene SEM1 26S proteasome subunit Neighboring gene uncharacterized LOC107078658

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023189.1 Chromosome LG11 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-aspartate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-glutamate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in aspartate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in malate-aspartate shuttle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-binding mitochondrial carrier protein Aralar2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023189.1 Reference LepOcu1 Primary Assembly

    Range
    37545087..37607947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015357746.1 → XP_015213232.1  calcium-binding mitochondrial carrier protein Aralar2 isoform X1

    UniProtKB/TrEMBL
    W5MYN3
    Conserved Domains (4) summary
    PTZ00168
    Location:355 → 618
    PTZ00168; mitochondrial carrier protein; Provisional
    pfam00153
    Location:544 → 635
    Mito_carr; Mitochondrial carrier protein
    pfam13499
    Location:57 → 109
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:44 → 109
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_006636169.2 → XP_006636232.1  calcium-binding mitochondrial carrier protein Aralar2 isoform X2

    UniProtKB/TrEMBL
    W5MYM6, W5MYN3
    Related
    ENSLOCP00000013485.1, ENSLOCT00000013514.1
    Conserved Domains (4) summary
    PTZ00168
    Location:326 → 589
    PTZ00168; mitochondrial carrier protein; Provisional
    pfam00153
    Location:515 → 606
    Mito_carr; Mitochondrial carrier protein
    pfam13499
    Location:28 → 80
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:15 → 80
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_015357747.1 → XP_015213233.1  calcium-binding mitochondrial carrier protein Aralar2 isoform X3

    UniProtKB/TrEMBL
    W5MYN3
    Conserved Domains (2) summary
    PTZ00168
    Location:293 → 556
    PTZ00168; mitochondrial carrier protein; Provisional
    pfam00153
    Location:482 → 573
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

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