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ccar1 cell division cycle and apoptosis regulator 1 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102688968, updated on 10-Mar-2024

Summary

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Gene symbol
ccar1
Gene description
cell division cycle and apoptosis regulator 1
See related
Ensembl:ENSLOCG00000009307
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See ccar1 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
26
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG5 NC_023183.1 (18197770..18220255, complement)

Linkage Group LG5 - NC_023183.1Genomic Context describing neighboring genes Neighboring gene DNA replication helicase/nuclease 2 Neighboring gene storkhead box 1 Neighboring gene uncharacterized LOC102689385 Neighboring gene uncharacterized LOC102689177

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023183.1 Chromosome LG5 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell division cycle and apoptosis regulator protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023183.1 Reference LepOcu1 Primary Assembly

    Range
    18197770..18220255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015346863.1 → XP_015202349.1  cell division cycle and apoptosis regulator protein 1 isoform X2

    UniProtKB/TrEMBL
    W5MSK6
    Conserved Domains (4) summary
    smart00513
    Location:661 → 694
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    pfam04871
    Location:1086 → 1172
    Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
    pfam14443
    Location:506 → 625
    DBC1; DBC1
    pfam14444
    Location:170 → 222
    S1-like; S1-like

  2. XM_015346861.1 → XP_015202347.1  cell division cycle and apoptosis regulator protein 1 isoform X1

    UniProtKB/TrEMBL
    W5MSK6, W5MSL3
    Related
    ENSLOCP00000011372.1, ENSLOCT00000011388.1
    Conserved Domains (4) summary
    smart00513
    Location:676 → 709
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    pfam04871
    Location:1101 → 1187
    Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
    pfam14443
    Location:521 → 640
    DBC1; DBC1
    pfam14444
    Location:185 → 237
    S1-like; S1-like

  3. XM_015346862.1 → XP_015202348.1  cell division cycle and apoptosis regulator protein 1 isoform X1

    UniProtKB/TrEMBL
    W5MSK6, W5MSL3
    Conserved Domains (4) summary
    smart00513
    Location:676 → 709
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    pfam04871
    Location:1101 → 1187
    Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
    pfam14443
    Location:521 → 640
    DBC1; DBC1
    pfam14444
    Location:185 → 237
    S1-like; S1-like
Nucleotide Protein
Heading Accession and Version

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